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As Above, So Below: The Worldview of Lynn Margulis

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"In the arithmetic of life, One is always Many."

Margulis, biologist and Distinguished Professor of Geosciences, composed a
grand and powerful view of the living and the non-living.  Integrating the work of obscure Russian
scientists, DNA pulled from cell organelles, computer-generated daisies, and
the hindguts of termites, her vision was wider in scope and more profound in
depth than any other coherent scientific world view.  At the time of her death on November 22nd, 2011, it is a
vision that remains misunderstood and misconstrued by many scientists. 

of this view came from her uncanny ability to first lean forward and see the
smallest inhabitants of the Earth; to hover there, and then to leap back at the
speed of thought to conceptualize the entire planet. Lean forward, then stand
back.  This inner movement, this seeing
from soil to space, marked a unique scientific endeavor. 

perspective was earned only through walking through diverse areas of study —
geology, genetics, biology, chemistry, literature, embryology,
paleontology.  Those fields, are
sometimes separated by an untraversed distance at universities: they are housed
in separate buildings which may as well be different worlds.  In Margulis, they found agreement and
discussion with each other; they were reconnected, just as they are
intrinsically connected in nature.

journey led her to emphasize in all her scientific work two phenomena — the
fusing of distinct beings into a single being: symbiosis; and the interaction
of organisms and their environments to create relational "loops" that led to
regulation of many Earth systems: Gaia Theory.

separately these concepts have the ability to redefine, respectively, how we understand
organisms and the environment.

together, they can redefine our consciousness.

* *

the Earth was born, give or take a few hundred million years, there were
bacteria.  Bacteria were here first
and are with us still, comprising a major part of the biosphere.  They are unseen with the naked eye,
they lack nuclei (for this reason, they are called prokaryotes — "pro" =
before,  "karyon" = nucleus). Their
forms were legion and their metabolisms were (and continue to be) strange.

life could exist, it did exist in these tiny forms.  One of these forms, 
thermoplasma, was an amorphous blob. It enjoyed heat and sulfur.  The stuff we now associate with the
devil, this bacterium was quite fond of. 
Another bacterium was the spirochete.  Familiar to us now as the type of bacteria that cause
syphilis and Lyme disease, the spirochete is a curl of an organism; a tremulous
and crooked line with no front or back. 
Margulis studied these strange beings through literature and
microscope.  From some corner of
her intellect, they called to her.

thermoplasmid and spirochete of early Earth were neighbors and, in a sense,
enemies.  Each one would try, when
it encountered the other, to consume it. 
This was a popular notion at the time: meet and consume. Soon enough,
encounter after encounter between the two beings led to an unprecedented event:
The beings came together to eat each other and decided on marriage instead.
Just what changes happened to cause this friendly ingestion is still unknown.  What is known is that the
spirochete didn't digest the thermoplasmid and the thermoplasmid did not digest
the spirochete.  As Margulis was
fond of saying, "1 + 1 = 1."  There
was a union of the two, resulting in an entirely new being.  They were inseparable, literally.  The thermoplasmid had a rotor now, and
the spirochete had a "head".  A
head and a tail: for the first time, beings had direction.  Cultural philosopher William Irwin
Thompson examines this emergence in his book, Coming into Being. It
isn't that spirochetes couldn't pursue a coordinate before — but the
asymmetricality of the new, combined entity, resulted in a new way of being, completely
without reference in the history of life
:  One end, distinct in form, ingested the food; the other end
did the rowing.  Both absorbed the
nutrition.  This was a giant step
in the evolution of consciousness, and is echoed by all true evolutions in
consciousness:  the rise of a new
way of being, inconceivable to the world that came before.

soon, other mergers were taking place. 
Soon, oxygen-breathing bacteria were incorporated by endosymbiosis into
this being.  Where once oxygen was
poison, now it flowed through without harm. 

green and photosynthetic, were incorporated in some of these cells as
well.  Both these symbioses remain
visible today — as the mitochondria in all cells (the oxygen-breathing bacteria
that became mitochondria) and chloroplasts in plant and some animal cells (the
cyanobacteria that led to chloroplasts). 
These are ancient partnerships that have never dissolved, and which
continue to pulse with rhythm, and our existence depends upon them.  Human cells reflect these unions, and
we breathe plant-respired oxygen.

inspired by the work of little-known biologists, revealed and proved these
mergers for us.  At first, her
worked was rejected and scoffed at. 
It did not fit the still-dominant neo-Darwinian paradigm that tells us all
evolutionary novelty comes from natural selection acting on genes and the
gradual accumulation of random genetic mutation.  But eventually these symbioses were accepted because they
could not be ignored.  In a
stunning display of reluctance, despite mounting evidence, the spirochetal
origin of the undulipodium (sometimes incorrectly called or mistaken for the
"flagellum" — though the undulipodium and flagellum are not similar either
chemically or structurally) is still contested and sometimes dismissed.

is unquestionable: bacteria make up the living architecture of our bodies. 

They evolved into our cells, and also remain "free-living" in our
digestive system.  Their spiraling
remnants are in our gums, our brains. 
This means our physical selves are universes composed of the movemenst,
biological agreements, and interactions of these beings.

can this mean for the individual? 
What happens when we are simultaneously songs and compositions of
notes?  "Identity is not an object;
it is a process with addresses for all the different directions and dimensions
in which it moves…" Margulis once stated, with her colleague Ricardo

what happens when we are notes, songs, and the notes again?  What happens when we shift our
perspective and see that we are cells made out of cells? 

* * *

above, so below and as below so above. 
Margulis, somewhere in the middle, decided to thoughtfully occupy both
positions.  "Why does everybody
agree that atmospheric oxygen…comes from life, but no one speaks about the
other atmospheric gasses coming from life?" she asked.  Bacteria created a whole other host of
these gasses, as Margulis knew well from her work.  After she found James Lovelock, they worked on making those
processes known.  Their collaboration
resulted in Gaia Theory, which was a disciplinary symbiosis — the theoretical
expression of Margulis's interdisciplinary life.

is the work of the relational loops of push and pull between bacteria, other
organisms, and the environment. The clouds, the atmospheric gasses, the pH and
salinity of the ocean, and other Earth systems express the "dialogue" between
the organisms and the Earth.  This
dialogue is Gaia Theory. 
Particularly relevant to these relational (often called "feedback")
loops are the smallest living beings, the bacteria.  In this dialogue, the information yielded from and received
by the bacteria and environment is absolutely crucial to the existence of life
on this planet. Remove the bacteria and everything dies.  The world becomes a Mars or a Venus,
overtaken by harshness or billowing clouds so thick that everything is
obscured.  No direction-creating
spirochetes and thermoplasma; no respiring green cyanobacteria; no purpose or
breath; and there is no biosphere, for they are its regulators.

science behind Gaia, particularly that found in Lovelock's formulations, is
complex and detailed, not guesswork. 
But Lovelock came up with an understandable and accesible metaphor in
the form of a computer program called Daisyworld.  Daisyworld is not the "proof" of Gaia: Lovelock and his
colleague Andrew Watson devised the program to see if living and environmental
factors could theoretically interact without intention.  This was a rebuff to the many
criticisms that Gaia had to act through some sort of new age benevolence.  This view might be acceptable in
spiritual circles, but is damning in scientific ones, and so: Lovelock's little

Daisyworld, there are black daisies, which absorb the sun's heat, and white
daisies, which reflect heat.  Both
flowers grow and produce offspring, and both have the same thresholds for life
and growth — they cannot grow at a low temperature and die at too high a
temperature.  The black daisies,
which absorb heat, grow faster in cooler conditions; since the heat accumulates
in their petals.  White daisies,
which reflect the heat, need warmer conditions to produce more offspring and
thrive.  The sun that shines on
Daisyworld is dynamic.  It grows in
luminosity over millions of years.

is Margulis, quoted at length to make clear the results.

any extraneous assumptions, without sex or evolution, without mystical
presuppositions of planetary consciousness, the daisies of Daisyworld cool
their world despite their warming sun," Margulis writes. "As the sun increases
in luminosity, the black daisies grow, expanding their surface area, absorbing
heat, and heating up their surroundings. 
As the black daisies heat up more of the surrounding land surface, the
surface itself warms, permitting even more population growth.  The positive feedback continues until
daisy growth has so heated the surroundings that white daisies began to crowd
out the black ones.  Being less
absorbent and more reflective, the white daisies begin to cool down the
planet…Despite the ever-hotter sun, the planet maintains a long plateau of
stable temperatures."

additional factors have been added into subsequent Daisyworld models.  The little world has always displayed a
deep relationship between species selection and planetary temperature

environment could no longer be seen as a tyrant, lording over selection; it was
now a co-evolving field.  And all
the organisms on the planet are connected by this vast system of regulation and
dynamism.  "Gaia," Margulis's former
student Greg Hinkle said, "is just symbiosis as seen from space."

20 kilometers up or down on the Earth escapes the pulse of collectivity.  Indeed, no action or process is
untouched by it, even the action of evolution itself.

* * *

answer to evolution was a logical extension of her work: Evolution happened
through symbioses and Gaia.

symbiosis caused evolutionary innovation was readily observable in
microorganisms, in large part because of Margulis's work.  But neo-Darwinists such as Richard
Dawkins still refused to accept it as true in the case of multicellular
organisms, and thus tried and continue to try to discredit the theory.

for them, it's not so simple: Gaia processes are real and observable (and
sometimes referred to as "biogeochemistry", a term more acceptable to
mainstream science).  Furthermore,
the five kingdoms (bacteria, protoctists, fungi, plants, animals) of life are
all touched by symbiosis.  The
bacteria are the symbionts. The protoctists (mistakenly called
"protozoa" — but they are not animals, so the "zoo" in the word is a misnomer)
readily display symbioses.  Indeed,
symbiogenesis has been observed in the lab.  An amoeba population, accidentally infected with bacteria
was observed over long periods of time, and soon enough, the infecting bacteria
could not be removed from the infected amoeba without killing the

99.9% of all organisms on the planet are microbial beings, if we're talking
about evolution, we must be talking about microbes.  Richard Dawkins himself admitted as much in a recent debate
with Margulis at Oxford, when he said he could not claim to know much about
life, since he knew very little about bacteria.  Animals, plants and fungi readily display symbiotic mergers
as well.  It's not just that all
eukaryotic (nucleated) cells are the products of symbiosis. All animals have
symbiotic partners in their guts. 
Remove these symbionts and the animals die.  Because of the disparity in size, we have trouble thinking of
a rabbit as a symbiont with bacteria, but it is. 

this time with son and co-author, Dorion Sagan, presents it this way in their
book of strange, otherworldly brilliance, Acquiring Genomes:

question about how species originate may be rephrased as: ‘What is passed from
parent to descendant that we detect as evolutionary novelty?'  A straightforward answer is,
‘Populations and communities of microbes.'"

call the book's brilliance "strange" and "otherworldly" because in it, a new
view of the world rises to the surface. 
Acquiring Genomes, along with another of Margulis and Sagan's
books, Microcosmos show us a bacterial view of the world.  Bacteria exchange their genes laterally.  This means they don't pass their
genomic information only when they reproduce (though this can happen), but
also  through their simple
existence.  Bits of their genomes
float in and out of their bodies and into other bacteria.  This was — and is — happening all the
time.  The web of life created by
such gene transfers is unbelievably complex and can even be baffling.

with the many detailed examples of bacterial mergers at varying levels of
cellular complexity, the world revealed by Acquiring Genomes is also a
world of mating between distinct phyla (a classification just below "kingdom" —
e.g. creatures of different phyla vary wildly from one another).  This phenomenon, which should not be
possible according to scientific orthodoxy, has been shown by UK scientist Don
Williamson.  Again, Margulis's work
has been contested, but she and Williamson have collected vast amounts of data
and evidence, including live examples demonstrated in physician and writer
Frank Ryan's The Mystery of Metamorphosis.  Many people dismissed Margulis for this large-scale sexual
symbiosis, through which genomes are transmitted from one totally different
being to another; but most of them have not looked deeply into Williamson's
work, and certainly not his live samples, preferring instead to dismiss without
real investigation.  Margulis was
working on this project at the time of her death, and it remains to be seen
whether or not other scientists will champion WIlliamson.  Like much of Margulis's work, it
requires the uncommon ability to question basic assumptions to even understand
the phenomena.

* * *

her efforts and ideas, those accepted and those still controversial, led
Margulis to sharply criticize the standard neo-Darwinist theory of

not that she didn't understand it, as some of her critics liked to claim.  Margulis has examined natural selection
and genetic mutation carefully.  In
fact, Gaia theory is an intense examination of natural selection, since Gaia's
processes of regulation are the "natural selectors."  The push and pull of the biota (the
total sum of all organisms) and the inorganic — their weaving and separations,
their gestures of relationship — set the framework of regulation.  There is no need to be vague about
"fitness" and just what the environment "selects" with Gaia in the
picture.  Instead, there is
something to aim for — exploring Gaia's processes of regulations.

Gaia, the natural selector, does not create from the top-down alone.  While natural selection can refine all
beings, no new species have been shown to arise from the natural selection plus
random genetic mutation model.  The
difference between refinement and speciation is one that confounds and also
confuses neo-Darwinists, who cart out example after example of refinement as
proof of their theories, not realizing that they are still not indicating true
speciation. Darwin himself did this by using dog breeding as evidence for his
theory. Alfred Russell Wallace, who co-discovered evolution and whose view
differs from Darwin's in significant ways, referred to this as "unnatural
selection" and was keen to note that it could not represent real evolutionary

may not prove to be the beginning and end of evolution.  After all, it does not explain why forms
are expressed in the way that they are (e.g. Why should similar gene sets
express themselves in one creature as feathers and in another as spores?).  These laws of nature remain to be
revealed, but have been pursued in innovative ways by thinkers as disparate in
time and field as Johann Wolfgang von Goethe (who thought of certain forms as
having a "blueprint" of archetypal reality which bloomed into specific forms)
and Brian Goodwin (who looked at evolution as a movement of physical and
mathematical laws).  What is
definite is that the merging of beings is key, and symbiogenesis offers a clearly
alternative to the consistent but woefully incomplete
neo-Darwinian paradigm.

* * *

neo-Darwinists were equally critical of Margulis's work, some going so far as
to say she was "corrupted by fame" — presumably the slight fame she achieved
after she popularized the endosymbiotic origin of cell organelles.   Anyone who knew Margulis laughed
at such accusations.  She worked in
a small lab with a few dedicated graduate students: The lab was small in part
because she resisted funding from corporate and governmental agencies that she
thought would damage the integrity of her work.  Once she dismissed a potential funder for wanting her to do
work whose content could not be disclosed to the public.  "If it's not public, it's not science,"
she said, and hung up the phone on tens of thousands, possibly millions, of
dollars.  The graduate students
were dedicated because she practiced science for science's sake, and was fond
of quoting quantum physicist and philosopher David Bohm, who said, "Science is
the search for truth…whether we like it or not."  The truth was Margulis's concern, not popularity, not big
money, and certainly not fame.

neo-Darwinist concerns circled nervously around words like "Gaia" and
"cooperation" (which Margulis did not like to use).  They were, perhaps rightly, concerned that these terms were
ripe for religious appropriation. 
But Margulis herself was outspoken against such mishandling of her

new agers love to grasp symbiosis as signifying "altruism" between
organisms.  But it's much more
complex than that — there is something "in it" for every symbiont, just as a
state beneficial in some way arises out of each symbiosis.  Terms like "altruism" had no scientific
value, because they are too single-minded to describe the phenomenon.

age thinkers also use Gaia as a blanket term.  They've appropriated it to mean that the Earth is a living
organism.  Or they refer to Gaia as
a "goddess".  This turns Gaia into
a sort of Stepford planet by containing its complexity in a simple and
inadequate metaphor.  This no more
grasps reality than "selfishness" does our genes.  

Margulis expressed her solution to the error once by saying, "Gaia
is not merely an organism." 
The Earth is beyond stale conception.  It is more magnificent and active than we can
imagine.  Gaia is object and process.
Gaia houses volcanos and every book, every word on volcanos ever written, and
at the same time is those volcanos.  It is where our greatest loves live, and where every human
heartbeat has ever rhythmically pulsed. 
In this new understanding; that something can pulse with life and yet be
beyond our concepts of living, those concepts begin to change.

Gaia is conscious, it possesses a consciousness of a different magnitude,
probably of a different order all together.

Dawkins and his pre-cursors like John Maynard Smith, as well as other misguided
neo-Darwinist thinkers could not and cannot understand this lesson: this
complexity is impossible to incorporate in a linear and reductive

of their failure lies in a misunderstood version of cause and effect that
plagues science.  At a certain
level of complexity, somewhere just above a billiard ball clanking into a
another billiard ball, cause and effect begins to change its shape.  This change may be real — that is, it
may actually shift in its laws and patterns in nature — or it may be imagined —
in other words, it may demand a different sort of thinking.  Effectively it doesn't matter, since we
need to contend with the shift in our thinking.  To encompass complex systems
with our thinking, we must imagine a model that is less like
"cause-effect" more like "being-manifestation."  That is, multiple layers and numerous agents of forces
unconsciously conspire together, and their conspiring is so intermingled, that it
is simultaneously cause and effect, and thus beyond both.  For example, the being, or
process of Gaia manifests itself as an unstable, constantly correcting
level of oceanic salinity.  One
cannot be said to cause the other, since the oceanic salinity interacts so
deeply with the beings and environs from which it arises.  Symbiosis and biological forms demand
the same sort of thought.

complexity shames the metaphorical lack of nuance in "selfish genes".  Neo-Darwinists, who so often speak
publicly about the erosion of sound scientific thought, have themselves
engendered ideas that represent a threat to clear scientific thinking.  It's not merely that Dawkins's
metaphors are incorrect (and they are incorrect), but his whole idea of
evolution is too mystical (in the pejorative sense), too imagined, too
metaphorical to be correct. 
Dawkins, who claims to be an atheist, relies on a host of selfish angels
within us and the possibility for meme-salvation to justify his theory.  He substantiates his magical worldview
on a meager past of scientific work.

on the other hand, worked constantly and tirelessly in her lab, always aiming
at and incorporating new pursuits. 
At the time of her death, she — with her handful of graduate students
and a clutch of international scientists as collaborators — was researching
cures for Lyme disease and reassessing how treatable syphilis is (both Lyme and
syphilis come from spirochetes, which Margulis probably knew more about than
any other scientist); she was also writing a book on Emily Dickinson. Her
projects often had the unsettling side-effect of forcing us to reexamine our
most cherished presumptions.  In
other words, she was a sort of investigative light where Dawkins is merely
polemical shadow: she was a true materialist whose work produced spiritual

is an evolution that people can and have build social theories (memes, for
example) out of.  But symbiogenesis
and Gaia theory, truer versions of evolutionary motivators, require a new
philosophy and perspective to understand at all. 

It requires the deepening of the capacity to understand.

concepts are not conveniently, like neo-Darwinism, mirror-images of the current
economic system (nor are they, as many confusedly think, a Kropotkian "mutual
aid" analogue for socialism) and so have enjoyed no real social metaphor.   Perhaps as we — in the newly and
deeply connected world of the internet, social profiles, and globalization —
witness the dissolution of the cult of isolated individuality and embark on
understanding a clearer and more nuanced view of individuality, so to will we
ready ourselves for a clearer view of evolution and life.

"In the arithmetic of life, One is
always Many.  Many often make one,
and one, when looked at more closely, can be seen to be composed of many,"  said Margulis and Guerrero.  Being able to move from one
perspectival state to the next – this is a sort of mental phase transition that
is necessary to understand life, evolution, and the environment.  It is the sort of thinking Goethe
advocated; a thinking whose movement mirrored the movement of life itself. 

grasped this before us.  She has
done more than any other scientist in recent history to expand and explain
this.  Presented in the essay is
only a small sample of her visionary works.  It isn't always easy to grasp her thinking, nor to rise to
the challenges of it.  It is much
easier to dismiss complexity and reduce ourselves to smaller ideas.  Now that Margulis has died, it remains
our choice to catch up with what she and her life's work have set in
motion.  To do so, we must bring
together the many fields of knowledge she embodied.  Biologists must talk to physicists, virologists must talk to
geologists, cosmologists must talk to microbiologists, and scientists musty
talk to non-scientists.  This
motion of meeting and exchanging ideas, if we act with it, will evolve our



Asikainen, C. E. and Krumbein, W. E., edts., 2011, Chimeras and
of the Sensory Self. 
Cambridge:  MIT Press.


Capra, F., 1996, The Web of Life: A New Scientific Understanding
of Living Systems.
New York: Doubleday.


Margulis, Lynn, 1998, Symbiotic Planet: A New Look at

New York: Basic Books.


Margulis, L. and Sagan, D., 2002, Acquiring Genomes: A Theory of
the Origin of
New York: Basic Books.


Ryan, F., 2011.  The
Mystery of Metamorphosis: A Scientific Detective Story.
River Junction: Chelsea Green.


Sapp, J., 1994, Evolution by Association: A History of Symbiosis.
New York:  Oxford University Press.


Thompson, W.I., 1998, Coming into Being: Artifacts and Texts in
the Evolution of
New York:  St. Martin's.


Thompson, W.I., edt., 1991, Gaia 2: Emergence: The New Science of
Great Barrington:  Lindisfarne.


Thanks to
the students of Margulis Lab


Image courtesy of NASA Goddard Photo and Video. 

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